SRX835932
GSM1568495: H3K4me1 ChIPseq - homo2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic liver
NA
NA

Attributes by original data submitter

Sample

source_name
E14.5 Liver
strain
FVB
tissue
Liver
developmental stage
E14.5
genotype/variation
Rlf homozygous mutant
gender
male

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Single end

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40428426
Reads aligned (%)
94.8
Duplicates removed (%)
6.3
Number of peaks
8277 (qval < 1E-05)

mm9

Number of total reads
40428426
Reads aligned (%)
94.8
Duplicates removed (%)
6.4
Number of peaks
8295 (qval < 1E-05)

Base call quality data from DBCLS SRA