SRX835929
GSM1568492: H3K4me1 ChIPseq - wild1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic liver
NA
NA

Attributes by original data submitter

Sample

source_name
E14.5 Liver
strain
FVB
tissue
Liver
developmental stage
E14.5
genotype/variation
Wildtype
gender
male

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Single end

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28691891
Reads aligned (%)
94.1
Duplicates removed (%)
5.5
Number of peaks
5580 (qval < 1E-05)

mm9

Number of total reads
28691891
Reads aligned (%)
94.0
Duplicates removed (%)
5.6
Number of peaks
5567 (qval < 1E-05)

Base call quality data from DBCLS SRA