SRX8349920
GSM3518647: F Mef2c fb1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic heart
NA
NA

Attributes by original data submitter

Sample

source_name
dissected E12.5 mouse ventricle
strain
mixed
tissue
dissected E12.5 mouse ventricle
Stage
embryonic
chip antibdoy
M280 Streptavidin Dynabeads

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tissue was homogenized and crosslinked for 30', RT in 1% formaldehyde/1XPBS, quenched with 500mM glycine 5', RT and washed multiple times with 1XPBS. KAPA HiFi Hyperprep library construction

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28518225
Reads aligned (%)
66.5
Duplicates removed (%)
15.7
Number of peaks
9666 (qval < 1E-05)

mm9

Number of total reads
28518225
Reads aligned (%)
66.3
Duplicates removed (%)
15.8
Number of peaks
9646 (qval < 1E-05)

Base call quality data from DBCLS SRA