Antigen

Antigen Class

TFs and others

Antigen

MYC

Cell type

Cell type Class

Bone

Cell type

U2OS

Tissue

bone

Lineage

mesoderm

Description

osteosarcoma from the tibia of a 15 year old, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972, (PMID: 6081590)

Sample

source_name

osteosarcoma cell line

cell line

U2OS

tissue

osteosarcoma cell line

chip antibody

anti-MYC (ab32072)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

crosslink (5 min), harvest, spike-in with 10 % NIH-3T3, lysis of cells, fragment with covaris libraries were prepared for sequencing using standard NEB protocols

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

40747704

Reads aligned (%)

92.4

Duplicates removed (%)

13.3

Number of peaks

5660 (qval < 1E-05)

hg19

Number of total reads

40747704

Reads aligned (%)

91.9

Duplicates removed (%)

14.5

Number of peaks

5628 (qval < 1E-05)