SRX8272865
GSM4519307: ATAC-seq N2RA828-2; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Spleen
Cell type
Splenocytes
NA
NA

Attributes by original data submitter

Sample

source_name
Spleenocytes
tissue
spleen
cell type
MZB
age
Adult 10-14 weeks old
strain
Mixed Background
genotype
N2RA

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Nuclei were isolated from purified MZBs as described by Buenrostro et al (2013) ATAC-Seq (Buenrostro et al, 2013)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
98208082
Reads aligned (%)
72.0
Duplicates removed (%)
51.3
Number of peaks
80734 (qval < 1E-05)

mm9

Number of total reads
98208082
Reads aligned (%)
72.0
Duplicates removed (%)
51.3
Number of peaks
80738 (qval < 1E-05)

Base call quality data from DBCLS SRA