Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary epithelial cells
cell line
Comma-Dbeta
cell type
Mammary epithelial cells
passage number
p28
sirna
none
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
chromatin was immunoprecipitated from cross-linked nuclear extracts using antibodies and DNA was purified. Illumina TruSeq ChIP library prep kit (Illumina)

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
53673309
Reads aligned (%)
97.7
Duplicates removed (%)
6.1
Number of peaks
276 (qval < 1E-05)

mm9

Number of total reads
53673309
Reads aligned (%)
97.6
Duplicates removed (%)
6.2
Number of peaks
280 (qval < 1E-05)

Base call quality data from DBCLS SRA