SRX823831
GSM1572686: dY-Tam-IgG; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
EpiLC
NA
NA

Attributes by original data submitter

Sample

source_name
dY-Tam-IgG
strain background
C57BL/6
genotype/variation
Foxd3 conditional knockout
cell type
EpiC (dY cells)
cell line of origin
epiblast cells: EpiC (dY cells)
treatment
-Lif -2i day 3
chip antibody
IgG (normal rabbit)
chip antibody vendor
Invitrogen

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
5431194
Reads aligned (%)
49.9
Duplicates removed (%)
23.9
Number of peaks
145 (qval < 1E-05)

mm9

Number of total reads
5431194
Reads aligned (%)
49.9
Duplicates removed (%)
24.0
Number of peaks
133 (qval < 1E-05)

Base call quality data from DBCLS SRA