SRX823825
GSM1572680: R-Tam-Brg1-rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smarca4

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
R-Tam-Brg1
strain background
C57BL/6
genotype/variation
Foxd3 conditional knockout
cell type
ESCs (R cells)
cell line of origin
embryonic stem cells: ESCs (R cells)
treatment
Lif 2i
chip antibody
Brg1
chip antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23158806
Reads aligned (%)
87.5
Duplicates removed (%)
81.1
Number of peaks
140 (qval < 1E-05)

mm9

Number of total reads
23158806
Reads aligned (%)
87.3
Duplicates removed (%)
81.3
Number of peaks
152 (qval < 1E-05)

Base call quality data from DBCLS SRA