Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SUMO2

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Isogenic HEK293 cells, wild-type GR, vehicle, SUMO-2/3 ChIP
cell line
HEK293
cell type
human embryonal kidney cell line
stably expressing
wild-type GR
treatment
EtOH vehicle
concentration
0.01%
time
1 h
chip antibody
SUMO-2/3 (MBL International, M114-3, lot # 24)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
49758496
Reads aligned (%)
97.5
Duplicates removed (%)
19.1
Number of peaks
922 (qval < 1E-05)

hg19

Number of total reads
49758496
Reads aligned (%)
97.0
Duplicates removed (%)
19.9
Number of peaks
1130 (qval < 1E-05)

Base call quality data from DBCLS SRA