Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EED

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
hiPSCs
cell type
hiPSCs
genotype
HBL1 KO
chip antibody
EED antibody, Active motif, RRID:AB_2615071, Catalog No: 61203

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
29042701
Reads aligned (%)
84.6
Duplicates removed (%)
6.8
Number of peaks
16685 (qval < 1E-05)

hg19

Number of total reads
29042701
Reads aligned (%)
83.0
Duplicates removed (%)
7.1
Number of peaks
16154 (qval < 1E-05)

Base call quality data from DBCLS SRA