Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
RS 411
NA
NA

Attributes by original data submitter

Sample

source_name
B-ALL cell line
tissue
bone marrow

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were lysed via centrifugation for 1 minute at 500xg. Nuclei were tagmented using Nextera (Illumina) Tagmentation DNA buffer and enzyme. libraries were prepped according to protocol by Buenrostro et al. Briefly, PCR was performed using barcoded primers that recongizne the adapter sequences inserted during the transpase reaction.

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
150762151
Reads aligned (%)
90.8
Duplicates removed (%)
49.7
Number of peaks
34541 (qval < 1E-05)

hg19

Number of total reads
150762151
Reads aligned (%)
90.3
Duplicates removed (%)
50.0
Number of peaks
34165 (qval < 1E-05)

Base call quality data from DBCLS SRA