Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC1

Cell type

Cell type Class
Blood
Cell type
KMS-27
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
KMS27
cell line
KMS27
genotype/variation
siChe
chip antibody
anti-HDAC1 (Sigma, H3284)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chipmentation protocol as described in Nat Methods. 2015;12(10):963-965. Schmidl C., et al; Chipmentation library construction protocol as described in Nat Methods. 2015;12(10):963-965. Schmidl C., et al;

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
84920845
Reads aligned (%)
98.2
Duplicates removed (%)
54.3
Number of peaks
852 (qval < 1E-05)

hg19

Number of total reads
84920845
Reads aligned (%)
97.4
Duplicates removed (%)
55.4
Number of peaks
543 (qval < 1E-05)

Base call quality data from DBCLS SRA