SRX8147145
GSM4486205: LN HOXB13 VEH S5 L002; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HOXB13

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
cell type
prostate cancer cell
antibody
HOXB13
cell line
LNCaP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries construction was performed using ThruPLEX DNA-seq 48D Kit (Rubicon Genomics)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6855271
Reads aligned (%)
92.7
Duplicates removed (%)
1.8
Number of peaks
114 (qval < 1E-05)

hg19

Number of total reads
6855271
Reads aligned (%)
92.0
Duplicates removed (%)
2.4
Number of peaks
165 (qval < 1E-05)

Base call quality data from DBCLS SRA