SRX8147135
GSM4486189: LN ATAC GSK S2 L002; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
cell type
prostate cancer cell
agent
GSK2879552
cell line
LNCaP

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Libraries construction was performed Tagment DNA TDE1 Enzyme and Buffer Kit(Illumina)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
63472683
Reads aligned (%)
97.3
Duplicates removed (%)
32.3
Number of peaks
46675 (qval < 1E-05)

hg19

Number of total reads
63472683
Reads aligned (%)
96.8
Duplicates removed (%)
33.1
Number of peaks
46405 (qval < 1E-05)

Base call quality data from DBCLS SRA