SRX8121615
Chip-Seq of homo sapiens: Scoliosis Patient Cartilage H3K27acChIP rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Bone
Cell type
Chondrocytes
MeSH Description
Polymorphic cells that form cartilage.

Attributes by original data submitter

Sample

isolate
cartilage was dissected off the bone
age
11-17
biomaterial_provider
Texas Scottish Rite Hospital
sex
missing
tissue
cartilage

Sequenced DNA Library

library_name
AIS_Cartilage_Chip_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
100014634
Reads aligned (%)
98.5
Duplicates removed (%)
19.2
Number of peaks
22105 (qval < 1E-05)

hg19

Number of total reads
100014634
Reads aligned (%)
98.0
Duplicates removed (%)
19.8
Number of peaks
21953 (qval < 1E-05)

Base call quality data from DBCLS SRA