SRX8121611
Chip-Seq of homo sapiens: Scoliosis Patient Bone H3K27acChIP rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Bone
Cell type
Bone
NA
NA

Attributes by original data submitter

Sample

isolate
Bone is from AIS patients
age
11-17
biomaterial_provider
Texas Scottish Rite Hospital
sex
missing
tissue
bone

Sequenced DNA Library

library_name
AIS_Bone_Chip_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
105722228
Reads aligned (%)
98.4
Duplicates removed (%)
12.5
Number of peaks
4961 (qval < 1E-05)

hg19

Number of total reads
105722228
Reads aligned (%)
97.4
Duplicates removed (%)
13.6
Number of peaks
4025 (qval < 1E-05)

Base call quality data from DBCLS SRA