Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Epidermis
Cell type
Melanoma
MeSH Description
A malignant neoplasm derived from cells that are capable of forming melanin, which may occur in the skin of any part of the body, in the eye, or, rarely, in the mucous membranes of the genitalia, anus, oral cavity, or other sites. It occurs mostly in adults and may originate de novo or from a pigmented nevus or malignant lentigo. Melanomas frequently metastasize widely, and the regional lymph nodes, liver, lungs, and brain are likely to be involved. The incidence of malignant skin melanomas is rising rapidly in all parts of the world. (Stedman, 25th ed; from Rook et al., Textbook of Dermatology, 4th ed, p2445)

Attributes by original data submitter

Sample

isolate
M397
age
na
biomaterial_provider
Wei Wei
sex
na
tissue
Melanoma
cell_line
M397
phenotype
H3k4me3
treatment
treated_with_V3

Sequenced DNA Library

library_name
19955_D3K4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
40245143
Reads aligned (%)
98.2
Duplicates removed (%)
10.4
Number of peaks
29231 (qval < 1E-05)

hg19

Number of total reads
40245143
Reads aligned (%)
97.2
Duplicates removed (%)
12.0
Number of peaks
29094 (qval < 1E-05)

Base call quality data from DBCLS SRA