SRX8109820
GSM4472965: CD34 scATACseq rep1; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+ hematopoietic cells
individual
47 year old healthy volunteer
cell type
CD34+ hematopoietic cells
timepoint
month 0

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
NP40 lysis, see method sections for full details Custom 10x Genomics scATAC-seq (mtscATAC-seq)

Sequencing Platform

instrument_model
NextSeq 550

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
328094481
Reads aligned (%)
89.2
Duplicates removed (%)
0.0
Number of peaks
2320 (qval < 1E-05)

hg19

Number of total reads
328094481
Reads aligned (%)
89.0
Duplicates removed (%)
0.0
Number of peaks
2306 (qval < 1E-05)

Base call quality data from DBCLS SRA