Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Prostate
Cell type
LAPC-4
NA
NA

Attributes by original data submitter

Sample

source_name
LAPC4 (prostate)
chip antibody
H3K4me1
cell line
LAPC4
treatment
Control

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
33139119
Reads aligned (%)
99.4
Duplicates removed (%)
9.8
Number of peaks
42180 (qval < 1E-05)

hg19

Number of total reads
33139119
Reads aligned (%)
99.1
Duplicates removed (%)
10.3
Number of peaks
42048 (qval < 1E-05)

Base call quality data from DBCLS SRA