Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
muscle
cell line
C2C12
tissue
muscle
cell type
myotube
treatment
siHRP2

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were resuspended in lysis buffer, centrifugated and resuspended for 60 min at 37℃ in Transposase reaction mix. The fragmented DNA was purified and added adaptor sequences by PCR. After DNA purification, DNA was sequenced on HiSeq X ten. Construction of libraries were performed using TruePrep DNA Library Prep Kit V2 for Illumina (Vazyme).

Sequencing Platform

instrument_model
HiSeq X Ten

mm10

Number of total reads
15258125
Reads aligned (%)
96.4
Duplicates removed (%)
24.8
Number of peaks
17071 (qval < 1E-05)

mm9

Number of total reads
15258125
Reads aligned (%)
96.4
Duplicates removed (%)
24.9
Number of peaks
17042 (qval < 1E-05)

Base call quality data from DBCLS SRA