Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Breast
Cell type
Mammary gland adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
mammary gland adenocarcinoma
parental cell line
MCF-7
esr1 genotype
Y537S
treatment
0.1% DMSO 1hr
chip antibody
Anti-FLAG

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
27982059
Reads aligned (%)
96.2
Duplicates removed (%)
42.7
Number of peaks
10273 (qval < 1E-05)

hg19

Number of total reads
27982059
Reads aligned (%)
95.7
Duplicates removed (%)
43.9
Number of peaks
10215 (qval < 1E-05)

Base call quality data from DBCLS SRA