Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Epidermis
Cell type
501A
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

source_name
501Mel
cell line
501Mel
cell type
melanoma
chip antibody
HA : IGBMC (12CA5)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP and ChIP-seq experiments were performed on chromatin from native 501Mel cells or the clone 8 cells according to standard protocols as previously described (Delacroix et al., 2010; Kobi et al., 2010). The libraries were sequenced on Illumina GAIIx sequencer (Illumina, San Diego, CA, USA) as single-end 36 base reads following Illumina’s instructions

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
10313992
Reads aligned (%)
51.0
Duplicates removed (%)
47.8
Number of peaks
664 (qval < 1E-05)

hg19

Number of total reads
10313992
Reads aligned (%)
49.3
Duplicates removed (%)
54.0
Number of peaks
705 (qval < 1E-05)

Base call quality data from DBCLS SRA