Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Prospermatogonia
NA
NA

Attributes by original data submitter

Sample

source_name
e16.5 prospermatogonia
strain background
C57BL/6
developmental stage
embryonic day 16.5
genotype/variation
Nsd1 HET
chip antibody
none

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
12881797
Reads aligned (%)
75.1
Duplicates removed (%)
13.1
Number of peaks
94 (qval < 1E-05)

mm9

Number of total reads
12881797
Reads aligned (%)
75.0
Duplicates removed (%)
13.4
Number of peaks
72 (qval < 1E-05)

Base call quality data from DBCLS SRA