SRX8049064
53BP1 ChIP-seq in HEK293T 4h after Cas9 delivery | no light, no drugs, replicate 2, raw FASTQ files

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

isolate
edited cells
age
not applicable
biomaterial_provider
ATCC
sex
female
tissue
not applicable
cell_line
HEK 293T
treatment
53bp1-4h-nL-nD-rep2

Sequenced DNA Library

library_name
53bp1-4h-nL-nD-rep2_FASTQ
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9534899
Reads aligned (%)
97.6
Duplicates removed (%)
13.6
Number of peaks
149 (qval < 1E-05)

hg19

Number of total reads
9534899
Reads aligned (%)
96.7
Duplicates removed (%)
13.8
Number of peaks
145 (qval < 1E-05)

Base call quality data from DBCLS SRA