Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
pancreatic adenocarcinoma
strain background
B6/FVB
cell line
KPCS
cell type
pancreatic adenocarcinoma cancer cell line
genotype/variation
KrasG12D;KO_Cdkn2a;KO_Smad4;KO_Trp53
chip antibody
anti-H3K27ac (Abcam ab4729)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
29118161
Reads aligned (%)
93.4
Duplicates removed (%)
19.6
Number of peaks
35483 (qval < 1E-05)

mm9

Number of total reads
29118161
Reads aligned (%)
93.3
Duplicates removed (%)
19.6
Number of peaks
35445 (qval < 1E-05)

Base call quality data from DBCLS SRA