SRX7966035
GSM4426264: WA09 low2; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC WA09
NA
NA

Attributes by original data submitter

Sample

source_name
human embryonic stem cells
cell line
WA09
cell type
human embryonic stem cells
cell surface markers
GCTM-2midCD9mid

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Tn5 transposase Transposase libraries were amplified for 9 cycles using barcoded primers

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
92612873
Reads aligned (%)
86.5
Duplicates removed (%)
8.6
Number of peaks
25499 (qval < 1E-05)

hg19

Number of total reads
92612873
Reads aligned (%)
86.0
Duplicates removed (%)
9.2
Number of peaks
24762 (qval < 1E-05)

Base call quality data from DBCLS SRA