Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Uterus
Cell type
HEC-1-B
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma Endometrioid

Attributes by original data submitter

Sample

source_name
HEC-1-B
cell type
human endometrial adenocarcinoma
genotype
mE1_CBSmutation
antibody
CTCF (Millipore, 07-729)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to NEB's instructions accompanying the DNA Sample Kit (#E7645).

Sequencing Platform

instrument_model
HiSeq X Ten

hg38

Number of total reads
19076589
Reads aligned (%)
81.5
Duplicates removed (%)
9.2
Number of peaks
21999 (qval < 1E-05)

hg19

Number of total reads
19076589
Reads aligned (%)
80.8
Duplicates removed (%)
10.4
Number of peaks
21942 (qval < 1E-05)

Base call quality data from DBCLS SRA