SRX7951799
GSM4420334: ChIP-seq-E23-Tbrg4-L10-H3K27ac-rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary gland
strain
C57BL/6
developmental stage
Lactation day 10
genotype
Wap-E2/3-Tbrg4
antibody
H3K27ac (Abcam, ab4729)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21802927
Reads aligned (%)
99.0
Duplicates removed (%)
6.5
Number of peaks
36291 (qval < 1E-05)

mm9

Number of total reads
21802927
Reads aligned (%)
98.9
Duplicates removed (%)
6.6
Number of peaks
36276 (qval < 1E-05)

Base call quality data from DBCLS SRA