SRX792933
GSM1556929: ER LY2 Veh 02; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
LY2
NA
NA

Attributes by original data submitter

Sample

source_name
LY2 Breast Cancer Cell Line
treatment
Untreated
cell line
LY2
chip antibody
ER

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
no entry

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33179871
Reads aligned (%)
99.0
Duplicates removed (%)
20.5
Number of peaks
51267 (qval < 1E-05)

hg19

Number of total reads
33179871
Reads aligned (%)
98.4
Duplicates removed (%)
21.6
Number of peaks
52950 (qval < 1E-05)

Base call quality data from DBCLS SRA