SRX792932
GSM1556928: ER LY2 Veh 01; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
LY2
NA
NA

Attributes by original data submitter

Sample

source_name
LY2 Breast Cancer Cell Line
treatment
Untreated
cell line
LY2
chip antibody
ER

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
no entry

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29778303
Reads aligned (%)
98.6
Duplicates removed (%)
9.0
Number of peaks
23971 (qval < 1E-05)

hg19

Number of total reads
29778303
Reads aligned (%)
98.1
Duplicates removed (%)
9.7
Number of peaks
24026 (qval < 1E-05)

Base call quality data from DBCLS SRA