SRX7918802
GSM4414005: Latent H3K4me1 ChIPseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
BCBL1
NA
NA

Attributes by original data submitter

Sample

source_name
TRExBCBL1-RTA
cell line
TRExBCBL1-RTA
infection
KSHV
replication
Latent
chip antibody
rabbit anti-H3K4me1 (Abcam 8895 lot# GR3283236-1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed with 1% formaldehyde and total nuclei was extracted KAPA HyperPrep kit

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40286221
Reads aligned (%)
94.2
Duplicates removed (%)
53.8
Number of peaks
38640 (qval < 1E-05)

hg19

Number of total reads
40286221
Reads aligned (%)
93.9
Duplicates removed (%)
54.6
Number of peaks
37859 (qval < 1E-05)

Base call quality data from DBCLS SRA