Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
liver
strain
C57BL/6
tissue
liver
treated
turpentine

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
RNA / DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

mm10

Number of total reads
691950628
Reads aligned (%)
90.1
Coverage rate (×)
24.7
Number of hyper MRs
243543 (qval < 1E-05)

mm9

Number of total reads
691950628
Reads aligned (%)
91.3
Coverage rate (×)
24.6
Number of hyper MRs
242709 (qval < 1E-05)

Base call quality data from DBCLS SRA