SRX7885784
GSM4404351: ChIP experiment with H3K9me3 antibody of NT shRNA H9 hESCs (replicate 1)[ChIP NT 1]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
H9 hESCs (WA09)
shRNA
H9 hESCs expressing NT shRNA as a control to compare with UBE2K shRNA-treated cells
antibody
anti-H3K9me3 antibody (Abcam, #8898)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Illumina ChIP Seq library Protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22219943
Reads aligned (%)
96.7
Duplicates removed (%)
11.1
Number of peaks
1992 (qval < 1E-05)

hg19

Number of total reads
22219943
Reads aligned (%)
94.3
Duplicates removed (%)
15.4
Number of peaks
2832 (qval < 1E-05)

Base call quality data from DBCLS SRA