SRX7885782
GSM4404349: ChIP experiment with H3K9me3 antibody of NT shRNA H9 hESCs (replicate 2)[Chip NT 2]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
H9 hESCs (WA09)
shRNA
H9 hESCs expressing NT shRNA as a control to compare with UBE2K shRNA-treated cells
antibody
anti-H3K9me3 antibody (Abcam, #8898)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Illumina ChIP Seq library Protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24864040
Reads aligned (%)
94.0
Duplicates removed (%)
8.1
Number of peaks
4955 (qval < 1E-05)

hg19

Number of total reads
24864040
Reads aligned (%)
89.6
Duplicates removed (%)
9.5
Number of peaks
3536 (qval < 1E-05)

Base call quality data from DBCLS SRA