SRX7885778
GSM4404345: ChIP experiment with H3K9me3 antibody of UBE2K shRNA H9 hESCs (replicate 1)[Chip Ube1]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
H9 hESCs (WA09)
shRNA
H9 hESCs expressing UBE2K shRNA to silence the expression of UBE2K
antibody
anti-H3K9me3 antibody (Abcam, #8898)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Illumina ChIP Seq library Protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29627980
Reads aligned (%)
71.2
Duplicates removed (%)
9.0
Number of peaks
2028 (qval < 1E-05)

hg19

Number of total reads
29627980
Reads aligned (%)
69.5
Duplicates removed (%)
9.3
Number of peaks
1517 (qval < 1E-05)

Base call quality data from DBCLS SRA