Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Lymph Nodes
MeSH Description
They are oval or bean shaped bodies (1 - 30 mm in diameter) located along the lymphatic system.

Attributes by original data submitter

Sample

source_name
Murine structural cells
organ
Lymphnode
cell type
GP38negCD31pos
condition
steady_state
age
8 to 12 weeks
strain
C57BL/6J

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
21572057
Reads aligned (%)
96.7
Duplicates removed (%)
74.3
Number of peaks
137 (qval < 1E-05)

mm9

Number of total reads
21572057
Reads aligned (%)
96.5
Duplicates removed (%)
74.4
Number of peaks
139 (qval < 1E-05)

Base call quality data from DBCLS SRA