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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Mnt
wikigenes
PDBj
CellType: Lung tumors
ATCC
MeSH
RIKEN BRC
SRX7849446
GSM4379845: MNT IP in sgCtrl preSC Rep2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Mnt
Cell type
Cell type Class
Lung
Cell type
Lung tumors
NA
NA
Attributes by original data submitter
Sample
source_name
preSC
genotype
Chga-GFP;Rblox/lox;p53lox/lox;p130lox
transduction
sgRNA control
antibody
MNT Bethyl Labs A303-627A; RRID: AB_11205638
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked in formaldehyde and ChIP was performed Libraries were constructed using the NEB Ultra II kit for Illumina
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
16909407
Reads aligned (%)
97.2
Duplicates removed (%)
5.2
Number of peaks
975 (qval < 1E-05)
mm9
Number of total reads
16909407
Reads aligned (%)
97.1
Duplicates removed (%)
5.8
Number of peaks
954 (qval < 1E-05)
Base call quality data from
DBCLS SRA