SRX7849443
GSM4379842: MAX IP in sgCtrl preSC Rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Max

Cell type

Cell type Class
Lung
Cell type
Lung tumors
NA
NA

Attributes by original data submitter

Sample

source_name
preSC
genotype
Chga-GFP;Rblox/lox;p53lox/lox;p130lox
transduction
sgRNA control
antibody
MAX Proteintech 10426-1-AP; RRID: AB_2141660

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked in formaldehyde and ChIP was performed Libraries were constructed using the NEB Ultra II kit for Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36164999
Reads aligned (%)
97.0
Duplicates removed (%)
9.1
Number of peaks
246 (qval < 1E-05)

mm9

Number of total reads
36164999
Reads aligned (%)
96.8
Duplicates removed (%)
10.0
Number of peaks
251 (qval < 1E-05)

Base call quality data from DBCLS SRA