Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Tert-/- Embryonic stem cells
strain
129J
passage numbers
p45
treatment group
KO_2DL
sample preparation
ChIP-seq

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ESC populations were harvested and crosslinked in formaldehyde. Cell pellets (frozen, or fresh) were subjected to chromatin preparation and immunopreciptiation with an antibody against H3K27me3, followed by extraction of genomic DNA. DNA samples were quantified, and libraries were generated and amplified by PCR, followed by library size determination using a Agilent BioAnalyzer. Libraries were then pooled, quantified, and sequenced on an Illumina MiSeq to determine the amount required for deep sequencing. Pooled libraries were then diluted accordingly and loaded on an Illumina NovSeq6000 for sequencing.

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

mm10

Number of total reads
35028509
Reads aligned (%)
93.3
Duplicates removed (%)
45.1
Number of peaks
1160 (qval < 1E-05)

mm9

Number of total reads
35028509
Reads aligned (%)
93.2
Duplicates removed (%)
45.2
Number of peaks
1123 (qval < 1E-05)

Base call quality data from DBCLS SRA