SRX7827998
gH2AX ChIP-seq in HEK293T cells with Cas9/cgRNA targeting ACTB | 30 min after activation, replicate 2, raw FASTQ files

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

isolate
edited cells
age
not applicable
biomaterial_provider
ATCC
sex
female
tissue
not applicable
cell_line
HEK 293T
treatment
gh2ax_actb_30m_rep2

Sequenced DNA Library

library_name
gh2ax_actb_30m_rep2_FASTQ
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44256898
Reads aligned (%)
99.0
Duplicates removed (%)
5.8
Number of peaks
587 (qval < 1E-05)

hg19

Number of total reads
44256898
Reads aligned (%)
98.2
Duplicates removed (%)
5.9
Number of peaks
445 (qval < 1E-05)

Base call quality data from DBCLS SRA