Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
ADV-D1-RD-FLAG Input
cell line
BALB/c

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA-Seq: RNA was extracted using Qiazol followed by purification using the miRNeasy kit (Qiagen) ChIP-Seq: DNA was exgtracted from mouse liver as previously described (PMID: 18556755). RNA-Seq: Libraries were prepared using TruSeq Stranded mRNA HT kit using standard Illumina protocols ChIP-Seq: Libraries were prepared using NEBNext ChIP-seq library prep reagent kit according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
22262383
Reads aligned (%)
97.3
Duplicates removed (%)
16.8
Number of peaks
520 (qval < 1E-05)

mm9

Number of total reads
22262383
Reads aligned (%)
97.0
Duplicates removed (%)
16.9
Number of peaks
573 (qval < 1E-05)

Base call quality data from DBCLS SRA