SRX7809331
GSM4351895: ChIP-seq H3K4me1 CR3flp P4-rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D
cell line
T47D
genotype/variation
wt/R330fsl cells
passages
<10
antibody
anti-H3K4me1 (abcam, ab8895)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to BIOO SCIENTIFIC instruction.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37610509
Reads aligned (%)
98.1
Duplicates removed (%)
1.9
Number of peaks
475 (qval < 1E-05)

hg19

Number of total reads
37610509
Reads aligned (%)
97.4
Duplicates removed (%)
1.9
Number of peaks
415 (qval < 1E-05)

Base call quality data from DBCLS SRA