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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Unclassified
ATCC
MeSH
RIKEN BRC
SRX7809286
GSM4350151: 41499 ATAC-Seq Pax5-deficient progenitor Pax5(fl/fl) Rag2(-/-) Vav-Cre; Mus musculus; ATAC-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Unclassified
Cell type
Unclassified
NA
NA
Attributes by original data submitter
Sample
source_name
Pax5-deficient progenitor
strain
C57BL/6
genotype
Pax5(fl/fl) Rag2(-/-) Vav-Cre
cell preparation
Ex-vivo FACS sorted from bone marrow
Sequenced DNA Library
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq libraries were prepared using NEBNext High-Fidelity 2x PCR Master Mix (New England Labs #M0541) and Nextera PCR primers.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
70274935
Reads aligned (%)
95.7
Duplicates removed (%)
28.4
Number of peaks
63586 (qval < 1E-05)
mm9
Number of total reads
70274935
Reads aligned (%)
95.6
Duplicates removed (%)
28.6
Number of peaks
63568 (qval < 1E-05)
Base call quality data from
DBCLS SRA