SRX7809282
GSM4350147: 39309 ATAC-Seq LSK WT; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
LSK cells
NA
NA

Attributes by original data submitter

Sample

source_name
LSK
strain
C57BL/6
genotype
WT
cell preparation
Ex-vivo FACS sorted from bone marrow

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq libraries were prepared using NEBNext High-Fidelity 2x PCR Master Mix (New England Labs #M0541) and Nextera PCR primers.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
47533823
Reads aligned (%)
95.7
Duplicates removed (%)
31.3
Number of peaks
52372 (qval < 1E-05)

mm9

Number of total reads
47533823
Reads aligned (%)
95.6
Duplicates removed (%)
31.5
Number of peaks
52331 (qval < 1E-05)

Base call quality data from DBCLS SRA