Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Epidermis
Cell type
Back skin
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse back skin
strain
NFIBfl/fl; NFIXfl/fl; R26-YFPfl/fl
Sex
male
age
P70
tissue
back skin
sorting markers
DAPI (neg), Sca-1 (neg), integrina6 (pos), CD34 (pos)
chip antibody
H3K27ac (Abcam, #ab4729)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Mouse hair follicle stem cells were purified from Sox9-CreER;NFIBfl/fl;NFIXfl/fl and WT littermate mice at P70 2nd telogen. Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibodies (H3K4me1, Abcam, #ab8895; H3K27ac, Abcam, #ab4729; H3K27me3, Millipore, #07-449). Libraries were prepared according to a ChIPmentation protocol (Schmidl et. al., Nature Methods, 2015 ). Briefly, immunoprecitiated nucleosomes on beads were tagmented by Tagmentation enzyme from the Nextera DNA Sample Prep Kit (Illumina). Follwoing tagmentation, the beads were washed and DNA elution, reerse cross-linking, DNA purification, and PCR amplification were performed. During PCR amplification, each sample were barcoded by different adaptor primers for illumina sequencing. Sequencing libraries were pooled and sequenced on the NextSeq 500 instrument with 37/38 cycles paried end high-output mode.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
68592533
Reads aligned (%)
99.0
Duplicates removed (%)
9.7
Number of peaks
14443 (qval < 1E-05)

mm9

Number of total reads
68592533
Reads aligned (%)
99.0
Duplicates removed (%)
9.8
Number of peaks
14535 (qval < 1E-05)

Base call quality data from DBCLS SRA