SRX7749566
GSM4320342: Cas9 (Ab) dCas9-KRAB nosg ChIPSeq rep1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cas9

Cell type

Cell type Class
Lung
Cell type
NCI-H441
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma Papillary

Attributes by original data submitter

Sample

source_name
H441
cell type
lung papillary adenocarcinoma cells
cell line
H441
chip antibody
Cas9 (Active Motif cat# 61757)
genotype
dCas9-KRAB_nosg

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using a ChIP kit (cat# 9003; Cell Signaling Technology). Library was constructed at CCHMC DNA Sequencing and Genotyping Core.

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
52107064
Reads aligned (%)
92.4
Duplicates removed (%)
23.5
Number of peaks
1143 (qval < 1E-05)

hg19

Number of total reads
52107064
Reads aligned (%)
91.8
Duplicates removed (%)
23.9
Number of peaks
624 (qval < 1E-05)

Base call quality data from DBCLS SRA