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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
SRX7726764
GSM4314524: H3K9/14Ac CTL1 190729; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
source_name
B cells
cell type
Primary B cells
tissue
Freshly isolated from spleen
strain
C57BL/6
chip antibody
Acetylated H3 (Merck Millipore, 06-599)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Soluble chromatin was prepared from sonicated nuclei and the sobule chromatin was immunoprecipitated with antibodies. Libraries were prepared with NEBnext Ultra II DNA library prep kit or ThruPLEX DNA-Seq Kit.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
48796526
Reads aligned (%)
95.9
Duplicates removed (%)
11.7
Number of peaks
19486 (qval < 1E-05)
mm9
Number of total reads
48796526
Reads aligned (%)
95.8
Duplicates removed (%)
11.8
Number of peaks
19493 (qval < 1E-05)
Base call quality data from
DBCLS SRA