SRX7715678
Targeting clinical epigenetic reprogramming for chemoprevention of metabolic and viral hepatocellular carcinoma

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Huh751
NA
NA

Attributes by original data submitter

Sample

isolate
S54360
age
not applicable
biomaterial_provider
Dr. F. Chisari (The Scripps Research Institute, La Jolla, CA)
sex
not applicable
tissue
hepatoma cell line
cell_line
Huh751
sample_type
cell culture
treatment
DMSO-differentiated

Sequenced DNA Library

library_name
S54360
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
58983398
Reads aligned (%)
97.2
Duplicates removed (%)
27.1
Number of peaks
32212 (qval < 1E-05)

hg19

Number of total reads
58983398
Reads aligned (%)
96.5
Duplicates removed (%)
27.8
Number of peaks
31856 (qval < 1E-05)

Base call quality data from DBCLS SRA