SRX7713768
GSM4308284: ChIP-seq-delCREB-L1-H3K4me3 rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary gland
strain
C57BL/6
developmental stage
Lactation day 1
genotype
Tbrg4-delCREB
antibody
H3K4me3 (Millipore, 07-473)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
66126643
Reads aligned (%)
99.0
Duplicates removed (%)
9.7
Number of peaks
27117 (qval < 1E-05)

mm9

Number of total reads
66126643
Reads aligned (%)
98.8
Duplicates removed (%)
9.7
Number of peaks
27186 (qval < 1E-05)

Base call quality data from DBCLS SRA