SRX7713749
GSM4308265: ChIP-seq-SE-Tbrg4-L10-PolII rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary gland
strain
C57BL/6
developmental stage
Lactation day 10
genotype
Wap-SE-Tbrg4
antibody
RNA polymerase II (Abcam, ab5408)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
58553662
Reads aligned (%)
98.8
Duplicates removed (%)
10.3
Number of peaks
14249 (qval < 1E-05)

mm9

Number of total reads
58553662
Reads aligned (%)
98.6
Duplicates removed (%)
10.2
Number of peaks
14297 (qval < 1E-05)

Base call quality data from DBCLS SRA